Search results for "data integration"
showing 10 items of 81 documents
PHYSICS-based retrieval of scattering albedo and vegetation optical depth using multi-sensor data integration
2017
Vegetation optical depth and scattering albedo are crucial parameters within the widely used τ-ω model for passive microwave remote sensing of vegetation and soil. A multi-sensor data integration approach using ICESat lidar vegetation heights and SMAP radar as well as radiometer data enables a direct retrieval of the two parameters on a physics-derived basis. The crucial step within the retrieval methodology is the calculus of the vegetation scattering coefficient KS, where one exact and three approximated solutions are provided. It is shown that, when using the assumption of a randomly oriented volume, the backscatter measurements of the radar provide a sufficient first order estimate and …
Formal ontology and CAD integration with macro parametric approach
2017
ABSTRACTThis paper discusses an ontological integration framework in the context of mereotopological formal ontology and CAD systems. Based on a comprehensive literature review of current design knowledge management and formal ontology research works, the authors propose the integration framework that can incorporate design knowledge with CAD systems. The primary role of mereotopology in this research work is the formal representation of design knowledge for the 3D solid assembly models. Most of the existing research works about design ontology present an abstract form and often require significant additional efforts to be integrated into CAD systems. Thus, this work introduces a formal ont…
Watermarking for ontologies
2011
In this paper, we study watermarking methods to prove the ownership of an ontology. Different from existing approaches, we propose to watermark not by altering existing statements, but by removing them. Thereby, our approach does not introduce false statements into the ontology. We show how ownership of ontologies can be established with provably tight probability bounds, even if only parts of the ontology are being re-used. We finally demonstrate the viability of our approach on real-world ontologies.
Data Sources Handling for Emergency Management: Supporting Information Availability and Accessibility for Emergency Responders
2017
Information is an essential component for better emergency response. Although a lot of information being available at various places during any kind of emergency, many emergency responders (ERs) use only a limited amount of the available information. The reason for this is that the available information heterogeneously distributed, in different formats, and ERs are unable to get access to the relevant information. Moreover, without having access to the needed information, many emergency responders are not able to obtain a sufficient understanding of the emergency situation. Consequently, a lot of time is being used to search for the needed information and poor decisions may be made. Therefo…
Automatic Integration of Spatial Data into the Semantic Web
2017
International audience
Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research
2015
A wealth of biospecimen samples are stored in modern globally distributed biobanks. Biomedical researchers worldwide need to be able to combine the available resources to improve the power of large-scale studies. A prerequisite for this effort is to be able to search and access phenotypic, clinical and other information about samples that are currently stored at biobanks in an integrated manner. However, privacy issues together with heterogeneous information systems and the lack of agreed-upon vocabularies have made specimen searching across multiple biobanks extremely challenging. We describe three case studies where we have linked samples and sample descriptions in order to facilitate glo…
Multi-level integration of environmentally perturbed internal phenotypes reveals key points of connectivity between them
2017
The genotype and external phenotype of organisms are linked by so-called internal phenotypes which are influenced by environmental conditions. In this study, we used five existing -omics datasets representing five different layers of internal phenotypes, which were simultaneously measured in dietarily perturbed mice. We performed 10 pair-wise correlation analyses verified with a null model built from randomized data. Subsequently, the inferred networks were merged and literature mined for co-occurrences of identified linked nodes. Densely connected internal phenotypes emerged. Forty-five nodes have links with all other data-types and we denote them "connectivity hubs." In literature, we fou…
Gene-based and semantic structure of the Gene Ontology as a complex network
2012
The last decade has seen the advent and consolidation of ontology based tools for the identification and biological interpretation of classes of genes, such as the Gene Ontology. The information accumulated time-by-time and included in the GO is encoded in the definition of terms and in the setting up of semantic relations amongst terms. This approach might be usefully complemented by a bottom-up approach based on the knowledge of relationships amongst genes. To this end, we investigate the Gene Ontology from a complex network perspective. We consider the semantic network of terms naturally associated with the semantic relationships provided by the Gene Ontology consortium and a gene-based …
SLFTD: A Subjective Logic Based Framework for Truth Discovery
2019
Finding truth from various conflicting candidate values provided by different data sources is called truth discovery, which is of vital importance in data integration. Several algorithms have been proposed in this area, which usually have similar procedure: iteratively inferring the truth and provider’s reliability on providing truth until converge. Therefore, an accurate provider’s reliability evaluation is essential. However, no work pays attention to “how reliable this provider continuously providing truth”. Therefore, we introduce subjective logic, which can record both (1) the provider’s reliability of generating truth, and (2) reliability of provider continuously doing so. Our propose…
gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms
2020
The study of bacterial symbioses has grown exponentially in the recent past. However, existing bioinformatic workflows of microbiome data analysis do commonly not integrate multiple meta-omics levels and are mainly geared toward human microbiomes. Microbiota are better understood when analyzed in their biological context; that is together with their host or environment. Nevertheless, this is a limitation when studying non-model organisms mainly due to the lack of well-annotated sequence references. Here, we present gNOMO, a bioinformatic pipeline that is specifically designed to process and analyze non-model organism samples of up to three meta-omics levels: metagenomics, metatranscriptomic…